論文

当研究室から発表した論文を、最新のものから順にリストしています。当研究室のメンバーとして論文に貢献した著者を太字で示しています。当研究室のメンバーが筆頭あるいは責任著者を務める論文にはプレビュー画像を付しています。†: 共筆頭著者. *: (共)責任著者.

2025

  1. albertCPGenome2025.png
    Preprint Complexity and innovation in carnivorous plant genomes
    Victor Albert*, Laura Ávila Robledillo, Steven J. Fleck, Yuhan GuoShunsuke Kanamori, Jonathan Kirshner, Andre Marques*, and Kenji Fukushima*
    Zenodo : . Aug 2025
  2. robledilloDrosera2025.png
    Preprint Contrasting centromere structures in carnivorous sundews uncover a dynamic evolutionary trajectory shaped by polyploidy and chromosomal remodeling
    Laura Ávila Robledillo, Steven J. Fleck, Jonathan Kirshner, Dirk Becker, Aaryan Bhatia, Gerhard Bringmann, Jordan R. Brock, Daniela Drautz-Moses, Matthias Freund, Rainer Hedrich, Luis Herrera-Estrella, Enrique Ibarra-Laclette, Ines Kreuzer, Tianying Lan, Sachiko Masuda, Martín Mata-Rosas, Todd P. Michael, Héctor Montero, Sitaram Rajaraman, Michaela Richter, David Sankoff, Stephan C. Schuster, Ken Shirasu, Sonja Trebing, Yves Van de Peer, Gerd Vogg, Tan Qiao Wen, Yue Zhang, Chunfang Zheng, Kenji Fukushima*, Jarkko Salojärvi*, André Marques*, and Victor A. Albert*
    bioRxiv : . Jul 2025
  3. wakatakeCephalotus2025.png
    Preprint Transcriptomic prey-capture responses in convergently evolved carnivorous pitcher plants
    Takanori Wakatake*, and Kenji Fukushima*
    bioRxiv : . Jul 2025
  4. Original Emergence of isochorismate-based salicylic acid biosynthesis within Brassicales
    Kunqi Hong, Masahito Nakano, Ying Tang, Linda Jeanguenin, Wenshang Kang, Yongliang Wang, Lu Zuo, Pengyue Li, Jingjng He, Wanqing Jiang, Ruidong Huang, Hidenori Matsui, Yiming Wang, Hirofumi Nakagami, Bo Li, Xia Li, Kabin Xie, Kenji Fukushima, Liang Guo, Xiaowei Han, Fumiaki Katagiri, Motoyuki Hattori, and Kenichi Tsuda*
    Proceedings of the National Academy of Sciences of the United States of America 122: e2506170122. Jul 2025
  5. Preprint Impaired trap closure in the counting-deficient Venus flytrap mutant DYSCALCULIA is caused by cell wall biomechanics
    Sonja Trebing, Matthias FreundAnda Larisa Iosip, Celian Diblasi, Vincent Krennerich, Jonathan Kirshner, Mitsuhiko P Sato, Andre Marques, Marie Saitou, Dirk Becker, Victor A Albert, Ingrid Tessmer, Kenji Fukushima, Rainer Hedrich*, and Ines Kreuzer*
    bioRxiv : . Jun 2025
  6. suetsuguGastrodia2025.png
    Original Genomic signature and evolutionary history of completely cleistogamous lineages in the non-photosynthetic orchid Gastrodia
    Kenji Suetsugu*, Shun K. Hirota, Takashi Makino, Yoshihisa Suyama, Shingo Kaneko, and Kenji Fukushima*
    Proceedings of the Royal Society B: Biological Sciences 292: 20250574. May 2025
  7. Preprint Molecular basis behind the isoprene emission diversity in Fagaceae
    Sora Koita, Ryosuke MunakataKenji Fukushima, Atsushi J. Nagano, Yuka Ikezaki, Akiko Satake, Takuya Saito, Kenji Miura, Akifumi Sugiyama, and Kazufumi Yazaki*
    bioRxiv : . May 2025
  8. Original Convergent acquisition of disulfide-forming enzymes in malodorous flowers
    Yudai Okuyama*Kenji Fukushima, Satoshi Kakishima, Anna K. Valchanova, Kohei Takenaka Takano, Yasuko Ito-Inaba, Takeru Nakazato, and Atsushi J. Nagano
    Science 388: 656-661. May 2025
  9. monteroMycorrhizalLoss2025.png
    Preprint Convergent losses of arbuscular mycorrhizal symbiosis in carnivorous plants
    Hector Montero*Matthias Freund, and Kenji Fukushima*
    bioRxiv : . Apr 2025
  10. Review Construction costs and tradeoffs in carnivorous pitcher plant leaves: towards a pitcher leaf economic spectrum
    Kadeem Jamal Gilbert*, David W. Armitage, Ulrike Bauer, Kenji Fukushima, Laurence Gaume, Rachel Love, Qianxi Lin, Sukuan Liu, Sylvie Martin-Eberhardt, Jonathan Millett, Tanya Renner, Mathias Scharmann, and Chris Thorogood
    Annals of Botany : mcaf024. Mar 2025

2024

  1. Original Convergent emergence of glucomannan β-galactosyltransferase activity in asterids and rosids
    Konan Ishida, Matthew Penner, Kenji Fukushima, Yoshihisa Yoshimi, Louis F.L. Wilson, Alberto Echevarrı́a-Poza, Li Yu, and Paul Dupree*
    Plant & Cell Physiology 65: 2030–2039. Oct 2024

2023

  1. saulSubgenomeDominanceShapes2023.png
    Original Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis
    Franziska Saul, Mathias ScharmannTakanori Wakatake, Sitaram Rajaraman, André Marques, Matthias Freund, Gerhard Bringmann, Louisa Channon, Dirk Becker, Emily Carroll, Yee Wen Low, Charlotte Lindqvist, Kadeem J. Gilbert, Tanya Renner, Sachiko Masuda, Michaela Richter, Gerd Vogg, Ken Shirasu, Todd P. Michael, Rainer Hedrich, Victor A. Albert*, and Kenji Fukushima*
    Nature Plants 9: 2000–2015. Dec 2023
  2. fukushimaCarnivorousPlantsUnlocking2023.png
    Dispatch Carnivorous plants: Unlocking the secrets of peristome geometry in pitcher plants
    Kenji Fukushima*
    Current Biology 33: R1155–R1157. Nov 2023
  3. monteroNonpreyBioticInteractions2023.png
    Primer Non-prey biotic interactions in carnivorous plants
    Héctor Montero, and Kenji Fukushima*
    Current Biology 33: R497–R500. Jun 2023
  4. fukushimaDetectingMacroevolutionaryGenotype2023.png
    Original Detecting macroevolutionary genotype–phenotype associations using error-corrected rates of protein convergence
    Kenji Fukushima*, and David D. Pollock
    Nature Ecology & Evolution 7: 155–170. Jan 2023
  5. suetsuguTranscriptomicHeterochronyCompletely2023.png
    Original Transcriptomic heterochrony and completely cleistogamous flower development in the mycoheterotrophic orchid Gastrodia
    Kenji Suetsugu†*Kenji Fukushima, Takashi Makino, Shuka Ikematsu, Tomoaki Sakamoto, and Seisuke Kimura*
    New Phytologist 237: 323–338. Jan 2023

2022

  1. freundDigestiveSystemsCarnivorous2022.png
    Update The digestive systems of carnivorous plants
    Matthias FreundDorothea Graus, Andreas Fleischmann, Kadeem J. Gilbert, Qianshi Lin, Tanya Renner, Christian Stigloher, Victor A Albert, Rainer Hedrich, and Kenji Fukushima*
    Plant Physiology 190: 44–59. Sep 2022
  2. Preprint Genome sequence of 12 Vigna species as a knowledge base of stress tolerance and resistance
    Ken Naito*Takanori Wakatake, Tomoko F. Shibata, Kohtaro Iseki, Shuji Shigenobu, Yu Takahashi, Eri Ogiso-Tanaka, Chiaki Muto, Kuniko Teruya, Akino Shiroma, Makiko Shimoji, Kazuhito Satou, Takashi Hirano, Atsushi J. Nagano, Norihiko Tomooka, Mitsuyasu Hasebe, Kenji Fukushima, and Hiroaki Sakai
    bioRxiv : 2022.03.28.486085. Mar 2022

2021

  1. hedrichOriginCarnivoryMolecular2021.png
    Review On the origin of carnivory: Molecular physiology and evolution of plants on an animal diet
    Rainer Hedrich*, and Kenji Fukushima*
    Annual Review of Plant Biology 72: 133–153. Jun 2021
  2. Original Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species
    Thomas M Winkelmüller, Frederickson Entila, Shajahan Anver, Anna Piasecka, Baoxing Song, Eik Dahms, Hitoshi Sakakibara, Xiangchao Gan, Karolina Kułak, Aneta Sawikowska, Paweł Krajewski, Miltos Tsiantis, Ruben Garrido-Oter, Kenji Fukushima, Paul Schulze-Lefert, Stefan Laurent, Paweł Bednarek, and Kenichi Tsuda*
    The Plant Cell 33: 1863–1887. Jun 2021
  3. fukushimaDiscordanceSeasonallyCovarying2021.png
    Original A discordance of seasonally covarying cues uncovers misregulated phenotypes in the heterophyllous pitcher plant Cephalotus follicularis
    Kenji Fukushima*, Hideki Narukawa, Gergo Palfalvi, and Mitsuyasu Hasebe*
    Proceedings of the Royal Society B: Biological Sciences 288: 20202568. Jan 2021
  4. Opinion How to grow a tree: Plant voltage-dependent cation channels in the spotlight of evolution
    Ingo Dreyer*, Frances C. Sussmilch, Kenji Fukushima, Gonzalo Riadi, Dirk Becker, Jörg Schultz, and Rainer Hedrich*
    Trends in Plant Science 26: 41–52. Jan 2021

2020

  1. Original Calcium dynamics during trap closure visualized in transgenic Venus flytrap
    Hiraku Suda, Hiroaki Mano, Masatsugu Toyota, Kenji Fukushima, Tetsuro Mimura, Izuo Tsutsui, Rainer Hedrich, Yosuke Tamada, and Mitsuyasu Hasebe*
    Nature Plants 6: 1219–1224. Oct 2020
  2. fukushimaAmalgamatedCrossspeciesTranscriptomes2020.png
    Original Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution
    Kenji Fukushima*, and David D. Pollock*
    Nature Communications 11: 4459. Sep 2020
  3. Original Genomes of the Venus flytrap and close relatives unveil the roots of plant carnivory
    Gergo Palfalvi, Thomas Hackl, Niklas Terhoeven, Tomoko F. Shibata, Tomoaki Nishiyama, Markus Ankenbrand, Dirk Becker, Frank Förster, Matthias Freund, Anda Iosip, Ines Kreuzer, Franziska Saul, Chiharu Kamida, Kenji Fukushima, Shuji Shigenobu, Yosuke Tamada, Lubomir Adamec, Yoshikazu Hoshi, Kunihiko Ueda, Traud Winkelmann, Jörg Fuchs, Ingo Schubert, Rainer Schwacke, Khaled Al-Rasheid, Jörg Schultz*, Mitsuyasu Hasebe*, and Rainer Hedrich*
    Current Biology 30: 2312–2320.e5. May 2020

2019

  1. Original Assembly and annotation of a draft genome of the medicinal plant Polygonum cuspidatum
    Yonghong Zhang, Lanlan Zheng, Yan Zheng, Chao Zhou, Ping Huang, Xiao Xiao, Yongheng Zhao, Xincai Hao, Zhubing Hu, Qinhua Chen, Hongliang Li, Xuanbin Wang, Kenji Fukushima, Guodong Wang, and Chen Li*
    Frontiers in Plant Science 10: 1274. Oct 2019

2018

  1. Book chapter Carnivorous plant genomes
    Tanya Renner, Tianying Lan, Kimberly M. Farr, Enrique Ibarra-Laclette, Luis Herrera-Esrella, Stephan C. Schuster, Mitsuyasu Hasebe, Kenji Fukushima, and Victor A. Albert
    Carnivorous plants: Physiology, ecology, and evolution : 135–152. Dec 2018
  2. Preprint Markov katana: A novel method for Bayesian resampling of parameter space applied to phylogenetic trees
    Stephen T. Pollard, Kenji Fukushima, Zhengyuan O. Wang, Todd A. Castoe, and David D. Pollock*
    bioRxiv : 250951. Jan 2018

2017

  1. fukushimaGenomePitcherPlant2017.png
    Original Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory
    Kenji Fukushima†*, Xiaodong Fang, David Alvarez-Ponce, Huimin Cai, Lorenzo Carretero-Paulet, Cui Chen, Tien-Hao Chang, Kimberly M. Farr, Tomomichi Fujita, Yuji Hiwatashi, Yoshikazu Hoshi, Takamasa Imai, Masahiro Kasahara, Pablo Librado, Likai Mao, Hitoshi Mori, Tomoaki Nishiyama, Masafumi Nozawa, Gergő Pálfalvi, Stephen T. Pollard, Julio Rozas, Alejandro Sánchez-Gracia, David Sankoff, Tomoko F. Shibata, Shuji Shigenobu, Naomi Sumikawa, Taketoshi Uzawa, Meiying Xie, Chunfang Zheng, David D. Pollock, Victor A. Albert*, Shuaicheng Li*, and Mitsuyasu Hasebe*
    Nature Ecology & Evolution 1: 0059. Feb 2017

2015

  1. Fukushima2015.png
    Original Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea
    Kenji Fukushima, Hironori Fujita, Takahiro Yamaguchi, Masayoshi Kawaguchi, Hirokazu Tsukaya, and Mitsuyasu Hasebe*
    Nature Communications 6: 6450. Dec 2015

2014

  1. fukushimaAdaxialAbaxialPolarity2014.png
    Review Adaxial–abaxial polarity: The developmental basis of leaf shape diversity
    Kenji Fukushima*, and Mitsuyasu Hasebe*
    Genesis 52: 1–18. Jan 2014
  2. Original Molecular phylogeny determined using chloroplast DNA inferred a new phylogenetic relationship of Rorippa aquatica (Eaton) EJ Palmer & Steyermark (Brassicaceae)—lake cress
    Hokuto Nakayama, Kenji Fukushima, Tatsuya Fukuda, Jun Yokoyama, and Seisuke Kimura*
    American Journal of Plant Sciences 5: 48–54. Jan 2014

2011

  1. Fukushima2011.png
    Original Contrasting patterns of the 5S and 45S rDNA evolutions in the Byblis liniflora complex (Byblidaceae)
    Kenji Fukushima, Kaori Imamura, Katsuya Nagano, and Yoshikazu Hoshi*
    Journal of Plant Research 124: 231–244. Mar 2011

2009

  1. Fukushima2009.png
    Original Drosera rotundifolia and Drosera tokaiensis suppress the activation of HMC-1 human mast cells
    Kenji Fukushima, Kanji Nagai, Yoshikazu Hoshi, Saeko Masumoto, Ichiho Mikami, Yumiko Takahashi, Hideaki Oike, and Masuko Kobori*
    Journal of Ethnopharmacology 125: 90–96. Aug 2009

2008

  1. Fukushima2008.png
    Original Somatic chromosome differentiation in three species of the Byblis liniflora complex (Byblidaceae)
    Kenji Fukushima, Katsuya Nagano, and Yoshikazu Hoshi*
    Chromosome Botany 3: 95–99. Dec 2008
  2. Original Tandem repeat rDNA sequences derived from parents were stably maintained in hexaploids of Drosera spathulata complex (Droseraceae)
    Yoshikazu Hoshi*, Junichi Shirakawa, Mitsuyasu Hasebe, Kenji Fukushima, and Katsuhiko Kondo
    Cytologia 73: 313–325. Sep 2008
  3. Original Bitter gourd suppresses lipopolysaccharide-induced inflammatory responses
    Masuko Kobori*, Hirosuke Nakayama, Kenji Fukushima, Mayumi Ohnishi-Kameyama, Hiroshi Ono, Tatsunobu Fukushima, Yukari Akimoto, Saeko Masumoto, Chizuko Yukizaki, Yoshikazu Hoshi, Tomoaki Deguchi, and Mitsuru Yoshida
    Journal of Agricultural and Food Chemistry 56: 4004–4011. Jun 2008

2007

  1. Original A comparative study of karyotypes in two species of Byblis (Byblidaceae)
    Yoshikazu Hoshi*Kenji Fukushima, and Katsuya Nagano
    Chromosome Botany 2: 39–43. Jun 2007