repositories

GitHub users and repositories related to this lab.

GitHub Repositories

kfuku52/genegalleon Charting evolutionary histories across genes and species

kfuku52/csubst Analyzing combinations of codon substitution histories

kfuku52/amalgkit RNA-seq data amalgamation for a large-scale evolutionary transcriptomics

kfuku52/RADTE Divergence time estimation in the complex history of gene family evolution

kfuku52/cdskit Processing protein-coding DNA sequences in frame

kfuku52/nwkit Newick tree processing

kfuku52/averagers Estimating average temperatures from historical daily extremes

mkrg01/genome_assembly_pipeline An integrated pipeline for eukaryotic genome assembly and gene annotation

mkrg01/permucn A tool to test associations between binary trait transitions and gene-family copy-number evolution from CAFE outputs